Researchers Solve Mystery of Uner Tan Syndrome with Targeted Next-Generation Sequencing Using Roche NimbleGen Sequence Capture and 454 Sequencing Systems
Uner Tan Syndrome is a debilitating condition that causes those affected to walk with a quadruped gait, using their feet and the palms of their hands while also suffering from severe mental retardation. This syndrome attracted worldwide attention and was featured in the 2006 BBC2 documentary The Family That Walks On All Fours. In addition to the initial family, other families with the same syndrome have been reported in Turkey as well as in Iraq, Iran and Brazil. Initial mapping studies indicated genetic heterogeneity. The scientific group, led by Prof. Tayfun Özçelik, M.D. at Bilkent University, identified the first gene in 2008 (Proc Natl Acad Sci U S A, 105:4232-6). However, the cause of this disorder in the original family featured in the BBC documentary remained unclear and theories regarding the contribution of genetic and environmental factors have been postulated. To identify the genetic basis, scientists have focused their search on a specific region on chr 17p13 in the genome. However, finding the disease causing mutation in the more than 7 million DNA bases within this region has presented an enormous challenge.
Using Roche NimbleGen's Sequence Capture technology and the GS FLX System from 454 Life Sciences, a Roche company, the ~ 7 Mb targeted candidate region from two affected and two carrier individuals were quickly extracted from the genome and sequenced. Trimming of the candidate mutations found in the region led to a list of four final candidates based on gene function and Mendelian disease models. Out of these four candidates, three were excluded by further screening 300 healthy controls. In the end, a single mutation was discovered from this study as the genetic basis for Uner Tan Syndrome in the affected family.
"Human genomics is enjoying a most productive period in the identification of genes associated with rare diseases thanks to next generation sequencing technologies. The gap between the identification of a disease locus and the actual documentation of causative mutations was a daunting task until recently; presenting a serious bottleneck in medical genetics studies" explained Prof. Tayfun Özçelik, "However, now as we celebrate the 10th anniversary of the completion of the human genome project, 'omics technologies coupled with genome sequencing approaches are offering unparalleled opportunities to better understand human evolution, early human migration and genetic diversity. Undoubtedly, next generation sequencing will lead to scientific discoveries, which will enable genetic knowledge to be translated into medical knowledge and contribute substantially to the understanding of the genetic basis of human diseases worldwide".
"NimbleGen and 454 Life Sciences' technologies worked wonderfully in this study. Combining new targeted next generation sequencing technologies with the traditional genetic linkage analysis enabled the efficient capture and high quality sequencing of the region, and led to the discovery of the disease causing mutation at a speed which was unimaginable a few years ago. It is quite convincing that, these kinds of studies will be a primary scientific and medical tool in the near future." added Dr. Gulsuner.
"We are excited to see the medical value that Roche products, such as NimbleGen Sequence Capture, provide in helping researchers unravel another unknown mystery in inherited diseases." stated Dr. Frank Pitzer, CEO at Roche NimbleGen. "We believe similar studies carried out by researchers like Prof. Tayfun Özçelik will help us better understand the causes of many genetic diseases, hopefully leading to future breakthroughs in diagnostic and therapeutic interventions."
For more information on Roche NimbleGen, visit www.nimblegen.com
Roche Diagnostics Deutschland GmbH
Headquartered in Basel, Switzerland, Roche is a leader in researchfocused healthcare with combined strengths in pharmaceuticals and diagnostics. Roche is the world's largest biotech company with truly differentiated medicines in oncology, virology, inflammation, metabolism and CNS. Roche is also the world leader in invitro diagnostics, tissuebased cancer diagnostics and a pioneer in diabetes management. Roche's personalised healthcare strategy aims at providing medicines and diagnostic tools that enable tangible improvements in the health, quality of life and survival of patients. In 2009, Roche had over 80'000 employees worldwide and invested almost 10 billion Swiss francs in R&D. The Group posted sales of 49.1 billion Swiss francs. Genentech, United States, is a wholly owned member of the Roche Group. Roche has a majority stake in Chugai Pharmaceutical, Japan. For more information: www.roche.com.
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454, 454 LIFE SCIENCES, 454 SEQUENCING, GS FLX, and NIMBLEGEN, are trademarks of Roche.
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